Software

MSRC Bioinformatics Software

 

Name Description Date
Added

Windows
Binaries

Source
Code
Backup Utility
Service v2.1.0
Software to backup directories on an instrument workstation to a central data repository.  Includes service and status components. 9-17-10     BUS    N/A
DirecTag Many partial sequences can be inferred from an MS/MS.  DirecTag automates sequence tag inference by scoring inferences on the basis of fragment intensity, m/z fidelity, and complementarity. 7-13-10 DirecTag Source
Code
 
TagRecon Sequence tags can be leveraged into full-length MS/MS interpretations by reconciling them to database sequences.  TagRecon identifies MS/MS on the basis of tags produced by DirecTag.     7-13-10 TagRecon Source
Code
ID Picker Making sense of raw peptide identifications requires protein assembly. IDPicker is designed to assemble parsimonious protein lists and incorporate experimental hierarchy in reporting confident protein identifications. 8-03-07

IDPicker

(Download the package to install IDPicker.)

Source
Code
SQTR Would you like to compare SEQUEST and MYRIMATCH results? Then you need SQTR. SQTR is designed to merge Sequest OUTs into a SQT file, so users can compare their Sequest results to their Myrimatch results. 1-09-07 SQTR

(Download the package to install SQTR.)
Source
Code
ReAdw We have a version of ReAdW that can translate Thermo RAW files into MZDATA and MZXML. 1-09-07    
Bumbershoot/
Myrimatch
Documentation Available Here 2-07-07 Myrimatch/DbValidate

(Download this package to install FragMINT.  NOTE: You will need Internet access to use FragMINT.)
Instructions
for obtaining MyriMatch source are available here.
PMOD
Version II
Visual Basic
6.0 Source
PMOD is a system designed to discover in MS/MS spectra, singly charged peptides with know or unknown post translational modifications. Here you will find the source code for PMOD as written in VB6.0. This version supports spectra files in MZDATA and MZXML formats. 7-25-06 N/A PMOD Version II Source Files

Compiled
PMOD
Version II
BetaVI with
.RAW Support
For Windows

This is the full Windows forms setup package for PMOD. It supports spectra files in the Thermo-Fischer RAW file format, along with spectra in MZDATA and MZXML formats. NOTE you will need to have either the Full Thermo V2.0 software package installed. 7-25-06

Pmod.zip with .RAW file support.

(Download this package to install PMOD Version II.)

N/A
Compiled PMOD Version II BetaVI Windows, NO ".RAW" Support This is the full Windows forms setup package for PMOD that supports spectra files in MZDATA and MZXML formats only. 7-25-06

Pmod.zip WITHOUT .RAW file support.

(Download this package to install PMOD Version II. for MZData and MZXML files only.)

N/A
FragMINT Shotgun Proteomics Tool   7-25-06

FragMINT

(Download this package to install FragMINT. NOTE: You will need to be connected to the Internet to properly use FragMINT.)
 

N/A