{"id":2193,"date":"2019-09-09T19:42:53","date_gmt":"2019-09-09T19:42:53","guid":{"rendered":"https:\/\/www.mc.vanderbilt.edu\/vanderbiltmedicine\/?p=2193"},"modified":"2019-09-09T19:42:53","modified_gmt":"2019-09-09T19:42:53","slug":"profiles-in-discovery","status":"publish","type":"post","link":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/profiles-in-discovery\/","title":{"rendered":"Profiles in discovery"},"content":{"rendered":"<p>Infectious diseases. Addiction. Mitochondrial diseases. Glioblastoma.<\/p>\n<p>In this issue of Vanderbilt Medicine, we share glimpses of five basic scientists in the early stages of their careers who are tackling these tough clinical problems by probing structures of individual proteins, cell identity, signaling pathways and animal decision-making behaviors.<\/p>\n<p>They are part of Vanderbilt University School of Medicine, Basic\u00a0Sciences, an integrated research and education division within the School of Medicine that includes four academic departments, eight\u00a0interdisciplinary centers, 20 service core facilities and the Office of\u00a0Biomedical Research Education and Training.<\/p>\n<p>More than 1,000 faculty, fellows, students and staff are making basic science discoveries every day at Vanderbilt \u2014 discoveries that are building the foundation for clinical advances in preventing, diagnosing and treating human diseases.<\/p>\n<p>These are some of their stories.<\/p>\n<p>***<\/p>\n<figure id=\"attachment_2195\" aria-describedby=\"caption-attachment-2195\" style=\"width: 200px\" class=\"wp-caption alignleft\"><a href=\"https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/Aug-1-2019-4_51-PM_2019-08-01_16-53-40.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-2195\" src=\"https:\/\/www.mc.vanderbilt.edu\/vanderbiltmedicine\/wp-content\/uploads\/sites\/7\/2019\/09\/Aug-1-2019-4_51-PM_2019-08-01_16-53-40-200x300.jpg\" alt=\"\" width=\"200\" height=\"300\" srcset=\"https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/Aug-1-2019-4_51-PM_2019-08-01_16-53-40-200x300.jpg 200w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/Aug-1-2019-4_51-PM_2019-08-01_16-53-40-768x1151.jpg 768w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/Aug-1-2019-4_51-PM_2019-08-01_16-53-40-683x1024.jpg 683w\" sizes=\"auto, (max-width: 200px) 100vw, 200px\" \/><\/a><figcaption id=\"caption-attachment-2195\" class=\"wp-caption-text\">Photo by John Russell<\/figcaption><\/figure>\n<p>In one of the classes that <strong>Manuel Ascano, PhD,<\/strong> teaches to graduate students, he shows a slide with two long sequences of RNA.<\/p>\n<p>\u201cI ask if anyone in the class can identify the first or second sequence, and of course they can\u2019t. The sequences just look like random stretches of ACGUs,\u201d said Ascano, assistant professor of Biochemistry, referring to the chemical bases that compose RNA \u2014 the messenger of genetic information encoded by DNA.<\/p>\n<p>Somehow though, he tells the students, proteins in our cells \u201cknow\u201d that the first sequence is from the bacterium that causes cholera and the second is from human tubulin.<\/p>\n<p>\u201cHow do these proteins know? This is the core curiosity that drives our research,\u201d Ascano said.<\/p>\n<p>Ascano and his team are looking for proteins that respond to RNA viruses at the earliest moments of interaction between virus and cell. And they\u2019re doing it in a unique way, using new technologies they\u2019ve developed to isolate and identify RNA-binding proteins.<\/p>\n<p>Of the 260 or so viruses that are known to cause human disease, about 60% use RNA instead of DNA as their genetic material. These include viruses that cause flu, Ebola, HIV and SARS.<\/p>\n<p>\u201cThese viruses are basically RNA wrapped up in a package,\u201d Ascano said. \u201cOur tools are made for exploring this moment of \u2018first contact\u2019 between the incoming viral RNA and the proteins that will recognize the virus and shut it down or be fooled and hijacked for the virus\u2019 use.\u201d<\/p>\n<p>The son of two physicians, Ascano grew up in Queens, New York, listening to dinner-table discussions about science and medicine and watching videos of surgeries with his dad. During college at the University of Illinois at Urbana-Champaign, his interest in medicine shifted to scientific discovery.<\/p>\n<p>\u201cI realized that I wanted to be working \u2018upriver,\u2019 at the source of the discoveries,\u201d Ascano said.<\/p>\n<p>He earned his PhD in biochemistry from the University of Cincinnati and studied RNA biology during a postdoctoral fellowship at The Rockefeller University.<\/p>\n<p>Along the way, he contributed to a basic science discovery that has moved rapidly to a drug being tested in phase I clinical trials. He and his colleagues at Rockefeller found a unique chemical bond in the product of an enzyme that senses foreign DNA in the cell and activates the protein STING, which fires up the innate immune response. The \u201cenzymatic quirk\u201d they discovered has informed efforts to develop a new class of cancer immunotherapy drugs.<\/p>\n<p>\u201cI was looking at this from a purely basic science perspective. It\u2019s humbling to see something you\u2019ve discovered end up in the clinic,\u201d Ascano said. \u201cI don\u2019t expect that to happen very often, but it\u2019s great when it does.\u201d<\/p>\n<p>Ascano joined the Vanderbilt faculty in 2014. He and his wife, Janice, also a PhD-trained scientist, have two children.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_2196\" aria-describedby=\"caption-attachment-2196\" style=\"width: 300px\" class=\"wp-caption alignleft\"><a href=\"https:\/\/www.mc.vanderbilt.edu\/vanderbiltmedicine\/wp-content\/uploads\/sites\/7\/2019\/09\/20190717JR001.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-2196 size-medium\" src=\"https:\/\/www.mc.vanderbilt.edu\/vanderbiltmedicine\/wp-content\/uploads\/sites\/7\/2019\/09\/20190717JR001-300x200.jpg\" alt=\"\" width=\"300\" height=\"200\" srcset=\"https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/20190717JR001-300x200.jpg 300w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/20190717JR001-768x512.jpg 768w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/20190717JR001-1024x683.jpg 1024w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><figcaption id=\"caption-attachment-2196\" class=\"wp-caption-text\">Photo by John Russell<\/figcaption><\/figure>\n<p><strong>Erin Calipari, PhD,<\/strong> is not intimidated by the complexity of the human brain. She\u2019s trying to understand the neural circuits that control motivation and decision-making.<\/p>\n<p>\u201cI know that the brain is complicated, but I think it\u2019s made up of a series of predictable events,\u201d said Calipari, assistant professor of Pharmacology. \u201cWe\u2019re studying at the cellular and molecular level how animals make decisions to seek rewarding stimuli and avoid negative stimuli, and how exposure to drugs of abuse dysregulates that code.\u201d<\/p>\n<p>Calipari discovered her passion for science when she was a student at the University of Massachusetts. She loved one of her science courses so much that she turned in a 20-page experimental design proposal for a \u201cfun\u201d end-of-course project. The professor promptly invited her to do research in his laboratory, which focused on drug abuse in animal models. She was hooked.<\/p>\n<p>\u201cIt was the greatest thing, and I ended up spending so many hours in that lab,\u201d Calipari said.<\/p>\n<p>The experience prepared Calipari for graduate studies at Wake Forest University, where she explored drug addiction in behavioral animal models and analyzed neurotransmitter release in the brain using analytical chemistry techniques that she and her colleagues developed.<\/p>\n<p>During her postdoctoral fellowship at Icahn School of Medicine at Mount Sinai, Calipari expanded the range of technologies she uses \u2014 both in brain tissue and in awake and behaving animals \u2014 to probe the neural circuits underlying drug abuse and addiction.<\/p>\n<p>\u201cI try to ask really good innovative questions and to use new technologies &#8230; to take us a step further than we\u2019ve been before,\u201d said Calipari, who joined the Vanderbilt faculty in 2017. \u201cThat\u2019s part of the fun of science \u2014 you always get to do something new.\u201d<\/p>\n<p>Calipari is excited about recent discoveries in her laboratory examining sex differences in drug abuse vulnerability. Using animal models, she and her team have found that estrogen increases the brain\u2019s cocaine reward signaling and makes females more likely to respond to \u201ccues\u201d that lead to relapse. The findings may point to different processes for drug addiction in men and women and suggest the need for different treatment strategies.<\/p>\n<p>As a member of the Vanderbilt Center for Addiction Research, Calipari values being in close proximity to clinicians and patients.<\/p>\n<p>\u201cWe\u2019re studying the basic mechanisms of how the brain works and how organisms make decisions, and we\u2019re doing this in the context of a disease process that\u2019s critical for public health,\u201d she said. \u201cWe look forward to working with our clinical colleagues to move basic science discoveries into translational studies.\u201d<\/p>\n<p>In her free time, Calipari enjoys rooting for the University of Kentucky men\u2019s basketball team, coached by her father, John Calipari.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_2197\" aria-describedby=\"caption-attachment-2197\" style=\"width: 200px\" class=\"wp-caption alignleft\"><a href=\"https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/20190726JR044_1.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-2197\" src=\"https:\/\/www.mc.vanderbilt.edu\/vanderbiltmedicine\/wp-content\/uploads\/sites\/7\/2019\/09\/20190726JR044_1-200x300.jpg\" alt=\"\" width=\"200\" height=\"300\" srcset=\"https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/20190726JR044_1-200x300.jpg 200w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/20190726JR044_1-768x1151.jpg 768w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/20190726JR044_1-683x1024.jpg 683w\" sizes=\"auto, (max-width: 200px) 100vw, 200px\" \/><\/a><figcaption id=\"caption-attachment-2197\" class=\"wp-caption-text\">Photo by John Russell<\/figcaption><\/figure>\n<p><strong>Breann Brown, PhD,<\/strong> likens her structural biology research to a jigsaw puzzle, where individual proteins are the puzzle \u201cpieces\u201d that fit together to perform cellular functions.<\/p>\n<p>By focusing in on the details of the proteins \u2014 their bumps and crevices \u2014 Brown hopes to put together a full picture of the physiology of mitochondria, the \u201cpower plants\u201d of the cell. Genetic mutations in the mitochondrial proteins she studies cause blood disorders and early-onset neurodegenerative diseases.<\/p>\n<p>\u201cWe\u2019re looking at how mutations alter the structure of the proteins and their interactions with other proteins to understand how it all fits together,\u201d said Brown, assistant professor of Biochemistry.<\/p>\n<p>Her team uses X-ray crystallography and other complementary biochemical techniques to explore protein structure and function.<\/p>\n<p>Brown didn\u2019t set out to be a structural biologist. She remembers declaring at the start of graduate school that she would never do X-ray crystallography because \u201cit seemed so difficult and abstract,\u201d she said. When one of her preferred laboratory rotations wasn\u2019t available, she ended up with an alternate rotation in a structural biology lab.<\/p>\n<p>\u201cThe project really interested me, but I was completely afraid of the technique,\u201d she said. \u201cI found out that you learn X-ray crystallography just like you learn anything else. It helped that I\u2019m very stubborn, and if I decide I\u2019m going to do something, I\u2019m going to do it.\u201d<\/p>\n<p>Brown grew up in the Maryland suburbs of Washington, D.C., and was always drawn to science and math, she said. She attributes her interest partly to her mother\u2019s work as a pharmacist.<\/p>\n<p>She studied chemistry and pharmacology at Duke University and then earned a PhD in molecular pharmacology and physiology at Brown University, where she studied proteins involved in multi-drug tolerance. She completed a postdoctoral fellowship at the Massachusetts Institute of Technology and joined the Vanderbilt faculty this year.<\/p>\n<p>As the only African American tenure-track professor in the School of Medicine, Basic Sciences departments, Brown looks forward to participating in initiatives to increase diversity at Vanderbilt, and she stresses the importance of also focusing on inclusion.<\/p>\n<p>\u201cJust getting people in the door doesn\u2019t help if there\u2019s no community to help them learn and grow and build a research program,\u201d she said. \u201cIt takes candid discussions and a willingness to challenge stereotypes to get to a place where we can really take steps to grow the School of Medicine and the University.<\/p>\n<p>\u201cI know that I\u2019m here because I\u2019ve had really good mentors who have supported me and my career goals. Now part of my job is to provide that same kind of mentorship to other people.\u201d<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_2199\" aria-describedby=\"caption-attachment-2199\" style=\"width: 300px\" class=\"wp-caption alignleft\"><a href=\"https:\/\/www.mc.vanderbilt.edu\/vanderbiltmedicine\/wp-content\/uploads\/sites\/7\/2019\/09\/ihrie.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-2199 size-medium\" src=\"https:\/\/www.mc.vanderbilt.edu\/vanderbiltmedicine\/wp-content\/uploads\/sites\/7\/2019\/09\/ihrie-300x200.jpg\" alt=\"\" width=\"300\" height=\"200\" srcset=\"https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/ihrie-300x200.jpg 300w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/ihrie-768x512.jpg 768w, https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/ihrie-1024x683.jpg 1024w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><figcaption id=\"caption-attachment-2199\" class=\"wp-caption-text\">Photo by John Russell<\/figcaption><\/figure>\n<p><strong>Rebecca Ihrie, PhD, and Jonathan Irish, PhD<\/strong> had the idea in mind for a long time \u2014 that at some point, they might be able to combine their unique research skills to study aggressive brain tumors in a way that no one else could.<\/p>\n<p>First, they built independent research programs: Ihrie focuses on understanding brain stem cells and their relationship to brain tumors; Irish develops new tools to study signaling networks in single cells.<\/p>\n<p>Now, with collaboration from neurosurgeons and neuropathologists, and with key investments by Vanderbilt, the two assistant professors of Cell and Developmental Biology are working together to explore the biology of single cells from glioblastoma tumors removed from patients.<\/p>\n<p>The pair, who met as undergraduates at the University of Michigan, were graduate students in cancer biology at Stanford, and got married along the way, wanted to work on difficult cancers in need of new scientific discovery and interventions.<\/p>\n<p>\u201cGlioblastoma is at the top of the list,\u201d Ihrie said. \u201cThe standard of care and the median survival has remained relatively unchanged for more than a decade.\u201d<\/p>\n<p>For Irish, brain tumor research is also personal. His father died from glioblastoma while Irish was in college.<\/p>\n<p>\u201cSeeing him go through a one-size-fits-all sort of treatment really shaped my thinking about cancer,\u201d Irish said. \u201cWanting to match the treatment to the tumor cells has been something I\u2019ve been working on for my whole scientific career.\u201d<\/p>\n<p>As a graduate student, Ihrie studied the tumor suppressor gene p53 and its function in mouse models. For postdoctoral training, she selected a research group that had discovered stem cells in the adult brain and was part of a neurosurgery department.<\/p>\n<p>\u201cI wanted to be able to collect and analyze human tissue so that I could study the exact thing I was interested in,\u201d Ihrie said.<\/p>\n<p>At Vanderbilt, Ihrie and her group have focused on a neuron-generating \u201cstem cell niche\u201d in the brain. They discovered that glioblastoma tumors that are in contact with the stem cell niche \u2014 a feature that is visible on MRI \u2014 have worse outcomes, and they are working to understand tumor cell-niche interactions.<\/p>\n<p>For his graduate studies, Irish joined a technology-focused lab, where he used flow cytometry of cell samples from patients with acute myeloid leukemia to characterize and link cell signaling to patient outcome. He wrote software to analyze the flow cytometry data, and later as a postdoctoral fellow co-founded a company to support the software. The software continues to be used, and the company, Cytobank, was recently purchased by Beckman Coulter.<\/p>\n<p>At Vanderbilt, Irish has led the development of mass cytometry, an analytical flow cytometry technology capable of measuring more than 40 features of individual cells. He and his team have perfected methods for applying single-cell approaches to solid tumors, such as brain tumors.<\/p>\n<p>Ihrie and Irish used their combined expertise to analyze single cells from glioblastomas in an \u201cunsupervised\u201d way.<\/p>\n<p>\u201cWe\u2019ve applied machine learning tools to classify the cells and look for patterns in the biology,\u201d Irish said. \u201cThen we asked, \u2018Are any of these cells that we\u2019ve revealed associated with good or bad outcomes when they\u2019re found at a high level in someone\u2019s tumor?\u2019\u201d<\/p>\n<p>The short answer: yes.<\/p>\n<p>If validated, the findings may translate into improved treatments, Ihrie and Irish said. The cells associated with bad outcomes have a pattern of cell signaling that points to possible treatments not previously considered for glioblastoma. The cells associated with good outcomes come from tumors with more immune cells and may be a signature for patients who would benefit from immunotherapies.<\/p>\n<p>Ihrie and Irish credit Vanderbilt with giving them the freedom to pursue an unusual experimental approach \u2014 by investing early in mass cytometry and by helping them secure pilot funding from discovery grants and foundations.<\/p>\n<p>\u201cWe\u2019re the only people in the world who have the team, the samples, the instrument and the expertise to do the studies we\u2019re doing,\u201d Irish said. \u201cVanderbilt is well-positioned for some exciting types of brain tumor research.\u201d<\/p>\n<p>The busy scientists, who joined the Vanderbilt faculty in 2011, can sometimes be found on weekends at a local skate center, roller-skating backward with their two young sons.<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Infectious diseases. Addiction. Mitochondrial diseases. Glioblastoma. In this issue of Vanderbilt Medicine, we share glimpses of five basic scientists in the early stages of their careers who are tackling these tough clinical problems by probing structures of individual proteins, cell identity, signaling pathways and animal decision-making behaviors. They are part of Vanderbilt University School of&#8230;<\/p>\n","protected":false},"author":219,"featured_media":2230,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2},"_links_to":"","_links_to_target":""},"categories":[13,14,15],"tags":[],"class_list":["post-2193","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-fall-2019","category-vm-features","category-vm-homepage-highlights"],"acf":[],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"https:\/\/cdn.vanderbilt.edu\/t2-main\/medschool-prd\/wp-content\/uploads\/sites\/82\/2019\/09\/slide9.jpg","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/pcDnub-zn","_links":{"self":[{"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/posts\/2193","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/users\/219"}],"replies":[{"embeddable":true,"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/comments?post=2193"}],"version-history":[{"count":0,"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/posts\/2193\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/media\/2230"}],"wp:attachment":[{"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/media?parent=2193"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/categories?post=2193"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/medschool.vanderbilt.edu\/vanderbilt-medicine\/wp-json\/wp\/v2\/tags?post=2193"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}