Course Schedule and Descriptions
Course # | Title | Instructor | Credits | Info |
---|---|---|---|---|
Fall 2024 (schedule) | ||||
Research Courses | ||||
Spring 2025 (schedule) | ||||
BMIF 6101 | Biomedical Informatics Foundations and Methods I | Ancker/Bejan | 3 | Course Plan |
BMIF 6310 | Foundations of Bioinformatics | Guo | 3 | Course Plan |
BMIF 6315 | Biomedical Informatics Foundations and Methods II | Giuse | 3 | Course Plan |
BMIF 6321 | Scientific Communication | Rosenbloom Davis | 1 | Course Plan |
BMIF 6322 | Scientific Communication | Rosenbloom Davis | 1 | Course Plan |
BMIF 6331 | Student Journal Club and Research in Progress | Reese | 1 | Course Plan |
BMIF 6332 | Student Journal Club and Research in Progress | Reese | 1 | Course Plan |
BMIF 6341 | Research Rotation | Staff | 1 | Course Plan |
BMIF 6342 | Research Rotation in Biomedical Informatics | Staff | 1 | |
BMIF 7311 | Systems Biology | TBD | 3 | Course Plan |
BMIF 7320 | Healthcare System and Informatics | TBD | 3 | Course Plan |
BMIF 7335 | Clinical Observations | Unertl | 3 | Course Plan |
BMIF 7340 | Clinical Informatics | Wright McCoy | 3 | Course Plan |
BMIF 7350 | Technology and Society | Novak | 3 | Course Plan |
BMIF 7370 | Evaluation Methods in Biomedical Informatics | Unertl Peterson | 3 | Course Plan |
BMIF 7380 | Data Privacy in Biomedicine | Malin | 3 | Course Plan |
BMIF 7391 | Special Topics: Data Management for Clinical & Translational Research | 3 | Course Plan | |
BMIF 7395 | Directed Research Independent Study | Staff | ||
BMIF 7999 | Master Thesis Research | |||
BMIF 8999 | Non Candidate Research | |||
BMIF 9999 | PhD Dissertation Research | |||
BMIF 7391-02 | Special Topics: Seminar in Biomedical Informatics: Foundations Human-Computer Interaction | Anders | 3 | Course Plan |
PUB 5515-01 | Intro to Public Health Informatics | TBD | 2 | Course Plan |
Course Descriptions
BMIF 6101. Biomedical Informatics Foundations and Methods I
This two-semester introductory course examines the unique characteristics of clinical and biomedical data, the context of their production and use, and the methods for representation and transformation of health data, information, and knowledge to improve health care. Students will be introduced to concepts, theories, and methods underlying contemporary and emerging biomedical informatics applications, including knowledge discovery, information retrieval, medical decision making, evaluation of evidence, knowledge representation, human factors, and qualitative methods. Students will also get exposure to the history of biomedical informatics and principles of ethical and equitable computing, as well as develop foundational concepts of analytical thinking and computation that are instrumental in solving challenging problems in biomedical informatics. This is the required introductory course for the PhD in biomedical informatics. FALL. [3] Ancker, Bejan
BMIF 6310. Foundations of Bioinformatics
This survey course introduces students to the experimental context and implementation of key algorithms in bioinformatics. The class begins with a review of basic biochemistry and molecular biology. The group will then focus on algorithms for matching and aligning biological sequences, given the context of molecular evolution. The emphasis will move from comparing sequences to the systems developed to enable high-throughput DNA sequencing, genome assembly, and gene annotation. Gene products will be the next focus as students consider the algorithms supporting proteomic mass spectrometry and protein structure inference and prediction. The informatics associated with transcriptional microarrays for genome-wide association studies will follow. Finally, the class will examine biological networks, including genetic regulatory networks, gene ontologies, and data integration. Formal training in software development is helpful but not required. Students will write and present individual projects. Undergraduates need the permission of the instructor to enroll. FALL. [3] Guo
BMIF 6102. Biomedical Informatics Foundations and Methods II
This two-semester introductory course examines the unique characteristics of clinical and biomedical data, the context of their production and use, and the methods for representation and transformation of health data, information, and knowledge to improve health care. Students will be introduced to concepts, theories, and methods underlying contemporary and emerging biomedical informatics applications, including knowledge discovery, information retrieval, medical decision making, evaluation of evidence, knowledge representation, human factors, and qualitative methods. Students will also get exposure to the history of biomedical informatics and principles of ethical and equitable computing, as well as develop foundational concepts of analytical thinking and computation that are instrumental in solving challenging problems in biomedical informatics. SPRING. [3] D. Giuse
BMIF 6321. Scientific Communication
The course will enhance students’ skills in written and oral scientific communication. An introductory segment covers categories of scientific writing, the peer review process, and ethical issues in research communication. Through a two-semester sequence, it provides direct, hands-on experience in writing papers, abstracts, and grant proposals; critiquing and copy editing; and preparing and giving presentations for scientific meetings. FALL, SPRING. [1-1] Rosenbloom, Davis
BMIF 6322. Scientific Communication
The course will enhance students’ skills in written and oral scientific communication. An introductory segment covers categories of scientific writing, the peer review process, and ethical issues in research communication. Through a two-semester sequence, it provides direct, hands-on experience in writing papers, abstracts, and grant proposals; critiquing and copy editing; and preparing and giving presentations for scientific meetings. FALL, SPRING. [1-1] Rosenbloom, Davis
BMIF 6331. Journal Club and Research in Progress
The class meets weekly and is a seminar course that involves two revolving formats: journal club presentations and student research in progress presentations. For Biomedical Informatics graduate students only, usually taken in the second year of the program. Fall [1] Reese
BMIF 6332. Journal Club and Research in Progress
The class meets weekly and is a seminar course that involves two revolving formats: journal club presentations and student research in progress presentations. For Biomedical Informatics graduate students only, usually taken in the second year of the program. Spring [1] Reese
BMIF 6341. Research Rotation in Biomedical Informatics
Students will perform research under the direction of a faculty adviser. FALL. [1-1] Staff.
BMIF 6342. Research Rotation in Biomedical Informatics
Research Rotation In Biomedical Informatics. Students will perform research under the direction of a faculty adviser. SPRING. [1-1] Staff.
BMIF 6390. Special Topics.
Selected topics in Biomedical Informatics. [3]
BMIF 7320. Healthcare System and Informatics
The purpose of this course is for students to understand the organizational world in which they will spend most of their professional lives. A better understanding will lead to strategies to build partnerships with physicians, researchers, hospitals, and academic organizations. In turn, better understanding will lead to working more closely as a team in planning future directions and implementing technological programs and changes. This course provides an overview of theoretical concepts as well as the practical tools for the student to understand and work effectively with two major topic areas: (1) understanding the health care environment; and (2) understanding organizational informatics, including the implementation of informatics systems and the concepts of behavioral change management. Prerequisite: BMIF 6101 is a required prerequisite to this course. SPRING. [3] TBD.
BMIF 7335. Clinical Observations
This course is designed to give graduate students with non-clinical experience exposure to the clinical environment and to understand more about the sources of the data they are analyzing. FALL [3]. Unertl
BMIF 7340. Clinical Informatics
Clinical informatics is the subdiscipline of biomedical informatics focused on clinical applications, particularly clinical information systems such as electronic health records. Topics covered include inpatient, outpatient, and departmental information systems; clinical decision support; terminology and data standards; quality and safety; patient computing; population health; and innovation, governance, and leadership. The course broadly explores how information systems and informatics principles are applied in clinical settings and is intended to be useful to students interested in these application areas, including students with a clinical background or those new to the clinical environment. Prerequisite: BMIF 6300 or permission of instructors. SPRING. [3] Wright, McCoy
BMIF 7350. Technology and Society
This course engages students in discovering relationships among individuals, institutions, and technologies, and how those relationships evolved in specific cultural contexts. Students and instructors will explore this topic in four modules: 1) understanding health care actors and technologies; 2) institutions and other infrastructures, including scientific disciplines, government, and information infrastructures; 3) principles of ethics and their application in biomedical informatics research and practice; and 4) integration of the concepts. The course will be conducted as a seminar, in which students and instructors will discuss assigned readings and films. Each student will present a final case to the group. FALL [3] Novak
BMIF 7370. Evaluation Methods in Biomedical Informatics
Students are introduced to health information technology evaluation, with exposure to study design, including sampling, appropriate use of controls; data collection, including human subjects research considerations; analysis, including testing for statistical significance, definitions of sensitivity and specificity, ROC plots; and reporting of results. Quantitative and qualitative methods will be covered, as well as methods and issues specific to health care settings. FALL. [3] Peterson, Unertl
BMIF 7380. Data Privacy in Biomedicine
This course introduces students to concepts for evaluating and constructing technologies that protect personal privacy in data collected for primary care and biomedical research. Material in this course touches on topics in biomedical knowledge modeling, data mining, policy design, and law. Prerequisite: students are expected to be proficient in writing basic software programs, although no specific programming language is required. SPRING. [3] Malin.
BMIF 7391. Special Topics in Biomedical Informatics
This course is designed for faculty to offer small groups of students a study course on a topic of mutual interest and concern in the faculty member’s area of expertise
BMIF 7395. Directed Research / Independent Study
Students will work under close supervision of a specific faculty member on an ongoing research problem. Depending on the specific project, students will learn aspects of study design, research methods, data collection and analysis, research manuscript writing, and human factors engineering. Completion of Course Plan and approval of the Director of Graduate Studies is required. SPRING/FALL. [1-3] Staff.
BMIF 7999. Master’s Thesis Research
BMIF 8999. Non-Candidate Research
Research prior to entry into candidacy (completion of qualifying examination) and for special non-degree students. [Variable credit: 0-12]
BMIF 9999
Ph.D. Dissertation Research. [0-12]
PUB 5515-01 Intro to Public Health Informatics
Students will have an understanding of the role of informatics in public health practice, particularly in the context of disease surveillance.