Academic & Coursework Information

Fall 2024

ORIENTATION

The schedule for Orientation will be full-including welcomes, introductions, and the general administrative housekeeping necessary to start your time at Vanderbilt. We will begin orientation on Monday, August 12, 2024. All students are required to attend the orientation in its entirety. New students will also complete all the necessary safety training courses to work in a lab.

CLASSES

The IGP Bioregulation I class will begin on Friday, August 16, but students will be fully booked beginning on the first day of orientation, August 12. Classes are held Monday through Friday from 9 a.m. until 11 a.m with programming and statistics coursework taking place in the afternoon.

The Bioregulation course is designed by the Interdisciplinary Graduate Program Executive Committee along with associated sub-committees for curriculum development. The course curriculum has been restructured for the 2024-25 school year based on insights from faculty and students and educational experts. Each year, feedback is collected and the curriculum is updated to meet the educational needs of students. The course will continue to be based on the most recent literature in the subject fields of the sections of the course. This means that lectures and discussions are heavily dependent on recently-published journal articles.

TEXTBOOKS

Textbooks primarily serve as background and general reference material, but any required preparation materials (reading or video) will be available on the appropriate course website.

We have a few copies of each of the following books available for short-term check out in 340 Light Hall. If you already have a difference edition of one of these books, you are responsible for finding the corresponding chapter in your edition for any background reading. Online books are also acceptable, if available.

Biochemistry, Voet and Voet, 4th ed.
Genetics: From Genes to Genomes, Hartwell et al 6th ed.
Molecular Biology of the Cell, Alberts et al. 6th ed.
Membrane Structural Biology, Luckey, 2nd ed.
Intuitive Biostatistics: A Nonmathematical guide to Statistical Thinking, Motulsky, 4^th ed.
Life and Research: A Survival Guide for Early-Career Biomedical Scientists, Grey and Oppenheimer, 1^st ed.

Here are a few other optional resources that are freely available online:

Statistics

Concepts and applications of inferential statistics (by Richard H. Lowry): http://vassarstats.net/textbook/
Handbook of biological statistics (by John H. McDonald): http://www.biostathandbook.com/index.html
A biologist’s guide to statistical thinking and analysis (by David Fay and Ken Gerow): http://www.wormbook.org/chapters/www_statisticalanalysis/statisticalanalysis.html
Principles of statistics guide (by GraphPad Prism): https://www.graphpad.com/guides/prism/latest/statistics/stat_—_principles_of_statistics_-.htm
Stats Q&A page with lots of great responses/interpretations: http://stats.stackexchange.com/questions

Python

Digital Lab python lessons: https://heardlibrary.github.io/digital-scholarship/script/python/lessons/
Python official documentation: https://docs.python.org/3/
Scientific computing with python: https://www.freecodecamp.org/learn/scientific-computing-with-python/

SOFTWARE

DO NOT start the free subscription until instructed to do so. If you do so now, the free 1 month trial won’t last!

GraphPad Prism- we will sign up for a 1 month free subscription during the Biostats portion of Bioregulation. Many of the labs through which you rotate will likely have a subscription to Prism, but if not, you can use some of the free online tools available from Prism (http://www.graphpad.com/quickcalcs/)
GraphPad (makers of Prism) free software: http://www.graphpad.com/quickcalcs/

ACADEMIC CALENDAR

Please be aware that the IGP academic year is uniquely developed to match the objectives of the program and may not mesh with the items listed for the Graduate School on the University calendar. Please check the schedule daily to find out what days you will have off.

FACULTY ADVISOR

Your faculty adviser during the first year IGP is Barbara Fingleton.