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An automated tool can link brain scans to cognitive deficits in NF1 patients

Posted by on Wednesday, March 15, 2023 in Uncategorized .

By Leah Mann

Researchers in the labs of Laurie Cutting, Patricia and Rodes Hart Endowed Professor and professor of special education at the Peabody College of Education and Human Development, and Bennett Landman, chair and professor of the Department of Electrical and Computer Engineering at the School of Engineering, recently published a study in Magnetic Resonance Imaging exploring a new tool for the neuroimaging of neurofibromatosis type 1 and its significance for patients.

NF1 is a congenital disorder caused by mutations in the NF1 gene, which regulates the production of a tumor suppressor. These mutations can trigger the growth of tumors such as neurofibromas, benign tumors that develop on nerve cells.

The best way to see many of the features of the disease is to do FLAIR imaging (a type of magnetic resonance imaging) on the brains of patients. In FLAIR images, NF1 patients often show abnormally bright spots that likely indicate the presence of fluid between myelin sheaths—the insulation surrounding certain nerve cells—which may contribute to the cognitive deficits observed in NF1 patients.

Unidentified Bright Objects—the bright spots in the FLAIR images—have been traditionally defined and segmented (digitally separated for further study) manually, which requires intensive training and is therefore time consuming and expensive. The current work, led by first author and neuroscience Ph.D. student Emily Harriott and co-author and recent neuroscience Ph.D. graduate Tin Nguyen, tested and validated a semi-automated approach for detecting and segmenting UBOs in children and adolescents with NF1. Cutting lab staff researcher Laura Baquero also participated in the study.

The new approach, which uses a tool called the Lesion Segmentation Tool, reliably identified and segmented UBOs and was much faster compared to doing the work manually. After establishing the utility of LST, the scientists explored possible correlations between total UBO volume and cognitive function. The researchers demonstrated that total UBO volume was related to single word reading ability, phonological awareness (recognizing and manipulating spoken parts of speech), and visuospatial skills, and participants with greater UBO volumes had lower scores on these cognitive measures.

Using automated tools will decrease the time and cost needed to analyze UBOs. Additionally, applying tools like LST to examine the relationships between UBO volumes and cognitive abilities will help create and refine more targeted pharmacological, academic, and behavioral interventions that will in turn help NF1 patients attain a higher quality of life.

Go Deeper

The article “Using a semi-automated approach to quantify Unidentified Bright Objects in Neurofibromatosis type 1 and linkages to cognitive and academic outcomes” was published in Magnetic Resonance Imaging in January 2023.


This study was funded by the National Institutes of Health, the National Center for Advanced Translational Science, the Eunice Kennedy Shriver National Institute of Child Health and Human Development, the National Institute of Neurological Disorders and Stroke, and the Mind Science Foundation.




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